From d85b38e4da8990925d457d2b7b613c6f2caf4015 Mon Sep 17 00:00:00 2001 From: Ryan Poplin Date: Mon, 6 Aug 2012 12:02:19 -0400 Subject: [PATCH] Updating HaplotypeCaller integration tests --- .../haplotypecaller/HaplotypeCallerIntegrationTest.java | 8 ++++---- 1 file changed, 4 insertions(+), 4 deletions(-) diff --git a/protected/java/test/org/broadinstitute/sting/gatk/walkers/haplotypecaller/HaplotypeCallerIntegrationTest.java b/protected/java/test/org/broadinstitute/sting/gatk/walkers/haplotypecaller/HaplotypeCallerIntegrationTest.java index 17ad37deb..dd2022fa7 100644 --- a/protected/java/test/org/broadinstitute/sting/gatk/walkers/haplotypecaller/HaplotypeCallerIntegrationTest.java +++ b/protected/java/test/org/broadinstitute/sting/gatk/walkers/haplotypecaller/HaplotypeCallerIntegrationTest.java @@ -20,17 +20,17 @@ public class HaplotypeCallerIntegrationTest extends WalkerTest { @Test public void testHaplotypeCallerMultiSample() { - HCTest(CEUTRIO_BAM, "", "eff4c820226abafcaa058c66585198a7"); + HCTest(CEUTRIO_BAM, "", "29ebfabcd4a42d4c5c2a576219cffb3d"); } @Test public void testHaplotypeCallerSingleSample() { - HCTest(NA12878_BAM, "", "2b40b314e6e63ae165186b55b14eee41"); + HCTest(NA12878_BAM, "", "9732313b8a12faa347f6ebe96518c5df"); } @Test public void testHaplotypeCallerMultiSampleGGA() { - HCTest(CEUTRIO_BAM, "-gt_mode GENOTYPE_GIVEN_ALLELES -alleles " + validationDataLocation + "combined.phase1.chr20.raw.indels.sites.vcf", "553870cc4d7e66f30862f8ae5dee01ff"); + HCTest(CEUTRIO_BAM, "-gt_mode GENOTYPE_GIVEN_ALLELES -alleles " + validationDataLocation + "combined.phase1.chr20.raw.indels.sites.vcf", "5e1d49d4110cd96c2e25f8e1da217e9e"); } private void HCTestComplexVariants(String bam, String args, String md5) { @@ -41,7 +41,7 @@ public class HaplotypeCallerIntegrationTest extends WalkerTest { @Test public void testHaplotypeCallerMultiSampleComplex() { - HCTestComplexVariants(CEUTRIO_BAM, "", "0936c41e8f006174f7cf27d97235133e"); + HCTestComplexVariants(CEUTRIO_BAM, "", "53df51e6071664725f6e7497f5ee5adf"); } }