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Updating HaplotypeCaller integration tests

This commit is contained in:
Ryan Poplin 2012-08-06 12:02:19 -04:00
parent b8709d8c67
commit d85b38e4da
1 changed files with 4 additions and 4 deletions
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8
protected/java/test/org/broadinstitute/sting/gatk/walkers/haplotypecaller/HaplotypeCallerIntegrationTest.java
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@ -20,17 +20,17 @@ public class HaplotypeCallerIntegrationTest extends WalkerTest {
@Test
public void testHaplotypeCallerMultiSample() {
HCTest(CEUTRIO_BAM, "", "eff4c820226abafcaa058c66585198a7");
HCTest(CEUTRIO_BAM, "", "29ebfabcd4a42d4c5c2a576219cffb3d");
}
@Test
public void testHaplotypeCallerSingleSample() {
HCTest(NA12878_BAM, "", "2b40b314e6e63ae165186b55b14eee41");
HCTest(NA12878_BAM, "", "9732313b8a12faa347f6ebe96518c5df");
}
@Test
public void testHaplotypeCallerMultiSampleGGA() {
HCTest(CEUTRIO_BAM, "-gt_mode GENOTYPE_GIVEN_ALLELES -alleles " + validationDataLocation + "combined.phase1.chr20.raw.indels.sites.vcf", "553870cc4d7e66f30862f8ae5dee01ff");
HCTest(CEUTRIO_BAM, "-gt_mode GENOTYPE_GIVEN_ALLELES -alleles " + validationDataLocation + "combined.phase1.chr20.raw.indels.sites.vcf", "5e1d49d4110cd96c2e25f8e1da217e9e");
}
private void HCTestComplexVariants(String bam, String args, String md5) {
@ -41,7 +41,7 @@ public class HaplotypeCallerIntegrationTest extends WalkerTest {
@Test
public void testHaplotypeCallerMultiSampleComplex() {
HCTestComplexVariants(CEUTRIO_BAM, "", "0936c41e8f006174f7cf27d97235133e");
HCTestComplexVariants(CEUTRIO_BAM, "", "53df51e6071664725f6e7497f5ee5adf");
}
}