zzh
/
gatk-3.8
1
0
Fork 0
Code Issues Pull Requests Packages Projects Releases Wiki Activity

Fixed merge conflict deleting a {

This commit is contained in:
Mark DePristo 2011-08-04 18:48:34 -04:00
parent 75632abf88
commit d7f98e5c2a
1 changed files with 6 additions and 4 deletions
Show Stats Download Patch File Download Diff File Expand all files Collapse all files

2
public/java/src/org/broadinstitute/sting/gatk/walkers/variantutils/VariantsToVCF.java
View File

@ -116,8 +116,10 @@ public class VariantsToVCF extends RodWalker<Integer, Integer> {
if (fixReferenceBase) { if (fixReferenceBase) {
vc = new VariantContext("Variant",vc.getChr(),vc.getStart(), vc.getEnd(), vc.getAlleles(), vc.getGenotypes(), vc.getNegLog10PError(), vc.getFilters(),vc.getAttributes(), ref.getBase()); vc = new VariantContext("Variant",vc.getChr(),vc.getStart(), vc.getEnd(), vc.getAlleles(), vc.getGenotypes(), vc.getNegLog10PError(), vc.getFilters(),vc.getAttributes(), ref.getBase());
} }
writeRecord(vc, tracker, ref.getBase()); writeRecord(vc, tracker, ref.getBase());
} }
}
return 1; return 1;
} }