From d749a5eb5f8e7fca10943d0ccc068d40c86381a3 Mon Sep 17 00:00:00 2001 From: aaron Date: Tue, 20 Oct 2009 04:56:51 +0000 Subject: [PATCH] added a check to ensure the eval track variation is bi-allelic. Also changed some string constants over to enums git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1884 348d0f76-0448-11de-a6fe-93d51630548a --- .../playground/gatk/walkers/varianteval/VariantEvalWalker.java | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/java/src/org/broadinstitute/sting/playground/gatk/walkers/varianteval/VariantEvalWalker.java b/java/src/org/broadinstitute/sting/playground/gatk/walkers/varianteval/VariantEvalWalker.java index 7444f8059..a7cc3844a 100755 --- a/java/src/org/broadinstitute/sting/playground/gatk/walkers/varianteval/VariantEvalWalker.java +++ b/java/src/org/broadinstitute/sting/playground/gatk/walkers/varianteval/VariantEvalWalker.java @@ -195,7 +195,7 @@ public class VariantEvalWalker extends RefWalker { int nBoundGoodRods = tracker.getNBoundRodTracks("interval"); if ( nBoundGoodRods > 0 ) { //System.out.printf("%s: n = %d%n", context.getLocation(), nBoundGoodRods ); - + // Iterate over each analysis, and update it Variation eval = (Variation)tracker.lookup("eval", null);