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refseq added to the list of known rod types 

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@820 348d0f76-0448-11de-a6fe-93d51630548a
This commit is contained in:
asivache 2009-05-26 21:06:44 +00:00
parent 23b7a28015
commit d73f2e95cc
1 changed files with 2 additions and 0 deletions
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2
java/src/org/broadinstitute/sting/gatk/refdata/ReferenceOrderedData.java
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@ -10,6 +10,7 @@ import java.lang.reflect.InvocationTargetException;
import java.lang.reflect.Method; import java.lang.reflect.Method;
import org.broadinstitute.sting.gatk.iterators.PushbackIterator; import org.broadinstitute.sting.gatk.iterators.PushbackIterator;
import org.broadinstitute.sting.playground.gatk.refdata.rodRefSeq;
import org.broadinstitute.sting.utils.GenomeLoc; import org.broadinstitute.sting.utils.GenomeLoc;
import org.broadinstitute.sting.utils.xReadLines; import org.broadinstitute.sting.utils.xReadLines;
import org.broadinstitute.sting.utils.Utils; import org.broadinstitute.sting.utils.Utils;
@ -61,6 +62,7 @@ public class ReferenceOrderedData<ROD extends ReferenceOrderedDatum> implements
addModule("dbSNP", rodDbSNP.class); addModule("dbSNP", rodDbSNP.class);
addModule("HapMapAlleleFrequencies", HapMapAlleleFrequenciesROD.class); addModule("HapMapAlleleFrequencies", HapMapAlleleFrequenciesROD.class);
addModule("SAMPileup", rodSAMPileup.class); addModule("SAMPileup", rodSAMPileup.class);
addModule("RefSeq", rodRefSeq.class);
addModule("Table", TabularROD.class); addModule("Table", TabularROD.class);
} }