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Updating default values for DiagnoseTargets

This commit is contained in:
Mauricio Carneiro 2012-05-30 10:48:45 -04:00
parent f987d5487e
commit d6e1205310
1 changed files with 2 additions and 2 deletions
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4
public/java/src/org/broadinstitute/sting/gatk/walkers/diagnostics/targets/DiagnoseTargets.java
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@ -102,10 +102,10 @@ public class DiagnoseTargets extends LocusWalker<Long, Long> {
private int maximumCoverage = 700;
@Argument(fullName = "minimum_median_depth", shortName = "med", doc = "The minimum allowable median coverage, used for calling LOW_MEDIAN_DEPTH", required = false)
private int minMedianDepth = 20;
private int minMedianDepth = 10;
@Argument(fullName = "maximum_insert_size", shortName = "ins", doc = "The maximum allowed distance between a read and its mate", required = false)
private int maxInsertSize = 50;
private int maxInsertSize = 500;
@Argument(fullName = "voting_status_threshold", shortName = "stV", doc = "The needed percentage of samples containing a call for the interval to adopt the call ", required = false)
private double votePercentage = 0.50;