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Don't print log if there are no BAMs

This commit is contained in:
Mark DePristo 2011-12-16 16:09:37 -05:00
parent dbc2ed2887
commit d6d2f49c88
1 changed files with 2 additions and 2 deletions
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4
public/java/src/org/broadinstitute/sting/gatk/datasources/reads/SAMDataSource.java
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@ -727,7 +727,7 @@ public class SAMDataSource {
int readerNumber = 1; int readerNumber = 1;
final SimpleTimer timer = new SimpleTimer().start(); final SimpleTimer timer = new SimpleTimer().start();
logger.info("Initializing SAMRecords " + (USE_PARALLEL_LOADING ? "in parallel" : "in serial")); if ( totalNumberOfFiles > 0 ) logger.info("Initializing SAMRecords " + (USE_PARALLEL_LOADING ? "in parallel" : "in serial"));
if ( ! USE_PARALLEL_LOADING ) { if ( ! USE_PARALLEL_LOADING ) {
final int tickSize = 50; final int tickSize = 50;
int nExecutedTotal = 0; int nExecutedTotal = 0;
@ -797,7 +797,7 @@ public class SAMDataSource {
executor.shutdown(); executor.shutdown();
} }
logger.info(String.format("Done initializing BAM readers: total time %.2f", timer.getElapsedTime())); if ( totalNumberOfFiles > 0 ) logger.info(String.format("Done initializing BAM readers: total time %.2f", timer.getElapsedTime()));
} }
final private void printReaderPerformance(final int nExecutedTotal, final private void printReaderPerformance(final int nExecutedTotal,