From d6d2f49c889d1b8323907e1d0aeaa0a6f430e48c Mon Sep 17 00:00:00 2001 From: Mark DePristo Date: Fri, 16 Dec 2011 16:09:37 -0500 Subject: [PATCH] Don't print log if there are no BAMs --- .../sting/gatk/datasources/reads/SAMDataSource.java | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/public/java/src/org/broadinstitute/sting/gatk/datasources/reads/SAMDataSource.java b/public/java/src/org/broadinstitute/sting/gatk/datasources/reads/SAMDataSource.java index 8d0df407e..75a851d65 100755 --- a/public/java/src/org/broadinstitute/sting/gatk/datasources/reads/SAMDataSource.java +++ b/public/java/src/org/broadinstitute/sting/gatk/datasources/reads/SAMDataSource.java @@ -727,7 +727,7 @@ public class SAMDataSource { int readerNumber = 1; final SimpleTimer timer = new SimpleTimer().start(); - logger.info("Initializing SAMRecords " + (USE_PARALLEL_LOADING ? "in parallel" : "in serial")); + if ( totalNumberOfFiles > 0 ) logger.info("Initializing SAMRecords " + (USE_PARALLEL_LOADING ? "in parallel" : "in serial")); if ( ! USE_PARALLEL_LOADING ) { final int tickSize = 50; int nExecutedTotal = 0; @@ -797,7 +797,7 @@ public class SAMDataSource { executor.shutdown(); } - logger.info(String.format("Done initializing BAM readers: total time %.2f", timer.getElapsedTime())); + if ( totalNumberOfFiles > 0 ) logger.info(String.format("Done initializing BAM readers: total time %.2f", timer.getElapsedTime())); } final private void printReaderPerformance(final int nExecutedTotal,