diff --git a/public/java/test/org/broadinstitute/sting/gatk/traversals/TraverseActiveRegionsTest.java b/public/java/test/org/broadinstitute/sting/gatk/traversals/TraverseActiveRegionsTest.java index a817c407c..53a0c0d52 100644 --- a/public/java/test/org/broadinstitute/sting/gatk/traversals/TraverseActiveRegionsTest.java +++ b/public/java/test/org/broadinstitute/sting/gatk/traversals/TraverseActiveRegionsTest.java @@ -239,19 +239,19 @@ public class TraverseActiveRegionsTest extends BaseTest { ActiveRegion region; region = activeRegions.get(genomeLocParser.createGenomeLoc("1", 1, 999)); - verifyReadMapping(region, new String[]{"simple", "overlap_equal", "overlap_unequal"}); + verifyReadMapping(region, "simple", "overlap_equal", "overlap_unequal"); region = activeRegions.get(genomeLocParser.createGenomeLoc("1", 1000, 1999)); - verifyReadMapping(region, new String[]{"boundary_unequal", "extended_and_np"}); + verifyReadMapping(region, "boundary_unequal", "extended_and_np"); region = activeRegions.get(genomeLocParser.createGenomeLoc("1", 2000, 2999)); - verifyReadMapping(region, new String[]{"boundary_equal"}); + verifyReadMapping(region, "boundary_equal"); region = activeRegions.get(genomeLocParser.createGenomeLoc("1", 249250600, 249250621)); - verifyReadMapping(region, new String[]{"end_of_chr1"}); + verifyReadMapping(region, "end_of_chr1"); region = activeRegions.get(genomeLocParser.createGenomeLoc("20", 10000, 10100)); - verifyReadMapping(region, new String[]{"simple20"}); + verifyReadMapping(region, "simple20"); } @Test @@ -278,19 +278,19 @@ public class TraverseActiveRegionsTest extends BaseTest { ActiveRegion region; region = activeRegions.get(genomeLocParser.createGenomeLoc("1", 1, 999)); - verifyReadMapping(region, new String[]{"simple", "overlap_equal", "overlap_unequal", "extended_and_np"}); + verifyReadMapping(region, "simple", "overlap_equal", "overlap_unequal", "extended_and_np"); region = activeRegions.get(genomeLocParser.createGenomeLoc("1", 1000, 1999)); - verifyReadMapping(region, new String[]{"boundary_equal", "boundary_unequal", "extended_and_np"}); + verifyReadMapping(region, "boundary_equal", "boundary_unequal", "extended_and_np"); region = activeRegions.get(genomeLocParser.createGenomeLoc("1", 2000, 2999)); - verifyReadMapping(region, new String[]{"boundary_equal", "boundary_unequal"}); + verifyReadMapping(region, "boundary_equal", "boundary_unequal"); region = activeRegions.get(genomeLocParser.createGenomeLoc("1", 249250600, 249250621)); - verifyReadMapping(region, new String[]{"end_of_chr1"}); + verifyReadMapping(region, "end_of_chr1"); region = activeRegions.get(genomeLocParser.createGenomeLoc("20", 10000, 10100)); - verifyReadMapping(region, new String[]{"simple20"}); + verifyReadMapping(region, "simple20"); } @Test @@ -317,21 +317,20 @@ public class TraverseActiveRegionsTest extends BaseTest { Map activeRegions = getActiveRegions(walker, intervals); ActiveRegion region; - region = activeRegions.get(genomeLocParser.createGenomeLoc("1", 1, 999)); - verifyReadMapping(region, new String[]{"simple", "overlap_equal", "overlap_unequal", "extended_and_np"}); + verifyReadMapping(region, "simple", "overlap_equal", "overlap_unequal", "extended_and_np"); region = activeRegions.get(genomeLocParser.createGenomeLoc("1", 1000, 1999)); - verifyReadMapping(region, new String[]{"boundary_equal", "boundary_unequal", "extended_and_np"}); + verifyReadMapping(region, "boundary_equal", "boundary_unequal", "extended_and_np"); region = activeRegions.get(genomeLocParser.createGenomeLoc("1", 2000, 2999)); - verifyReadMapping(region, new String[]{"boundary_equal", "boundary_unequal", "extended_and_np"}); + verifyReadMapping(region, "boundary_equal", "boundary_unequal", "extended_and_np"); region = activeRegions.get(genomeLocParser.createGenomeLoc("1", 249250600, 249250621)); - verifyReadMapping(region, new String[]{"end_of_chr1"}); + verifyReadMapping(region, "end_of_chr1"); region = activeRegions.get(genomeLocParser.createGenomeLoc("20", 10000, 10100)); - verifyReadMapping(region, new String[]{"simple20"}); + verifyReadMapping(region, "simple20"); } @Test @@ -339,7 +338,7 @@ public class TraverseActiveRegionsTest extends BaseTest { // TODO } - private void verifyReadMapping(ActiveRegion region, String[] reads) { + private void verifyReadMapping(ActiveRegion region, String... reads) { Collection wantReads = new ArrayList(Arrays.asList(reads)); for (SAMRecord read : region.getReads()) { String regionReadName = read.getReadName();