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Revert "fixed a typo in StringText.properties" 

This reverts commit b74c1c17e748f75e59d23545084b983e2a8d2fa6.
This commit is contained in:
Yossi Farjoun 2012-09-05 15:21:00 -04:00
parent ad5fa449e7
commit d6884e705a
1 changed files with 1 additions and 1 deletions
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2
protected/java/src/org/broadinstitute/sting/gatk/walkers/haplotypecaller/HaplotypeCaller.java
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@ -380,7 +380,7 @@ public class HaplotypeCaller extends ActiveRegionWalker<Integer, Integer> implem
allelesToGenotype.removeAll( activeAllelesToGenotype );
}
if( !activeRegion.isActive ) { return 0; } // Not active so nothing to do TODO : YOSSI Write something smart!!
if( !activeRegion.isActive ) { return 0; } // Not active so nothing to do!
if( activeRegion.size() == 0 && UG_engine.getUAC().GenotypingMode != GenotypeLikelihoodsCalculationModel.GENOTYPING_MODE.GENOTYPE_GIVEN_ALLELES ) { return 0; } // No reads here so nothing to do!
if( UG_engine.getUAC().GenotypingMode == GenotypeLikelihoodsCalculationModel.GENOTYPING_MODE.GENOTYPE_GIVEN_ALLELES && activeAllelesToGenotype.isEmpty() ) { return 0; } // No alleles found in this region so nothing to do!