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Merged bug fix from Stable into Unstable

This commit is contained in:
Mauricio Carneiro 2011-07-01 16:16:31 -04:00
parent 04971aecc9 b0fb63e20a
commit d631f645c4
6 changed files with 12 additions and 0 deletions
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2
public/scala/qscript/examples/ExampleCountLoci.scala → public/scala/qscript/org/broadinstitute/sting/queue/qscripts/examples/ExampleCountLoci.scala
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@ -1,3 +1,5 @@
package org.broadinstitute.sting.queue.qscripts.examples
import org.broadinstitute.sting.queue.QScript
import org.broadinstitute.sting.queue.extensions.gatk._

2
public/scala/qscript/examples/ExampleCountReads.scala → public/scala/qscript/org/broadinstitute/sting/queue/qscripts/examples/ExampleCountReads.scala
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@ -1,3 +1,5 @@
package org.broadinstitute.sting.queue.qscripts.examples
import org.broadinstitute.sting.queue.QScript
import org.broadinstitute.sting.queue.extensions.gatk._

2
public/scala/qscript/examples/ExampleCustomWalker.scala → public/scala/qscript/org/broadinstitute/sting/queue/qscripts/examples/ExampleCustomWalker.scala
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@ -1,3 +1,5 @@
package org.broadinstitute.sting.queue.qscripts.examples
import org.broadinstitute.sting.queue.QScript
import org.broadinstitute.sting.queue.extensions.gatk._

2
public/scala/qscript/examples/ExampleUnifiedGenotyper.scala → public/scala/qscript/org/broadinstitute/sting/queue/qscripts/examples/ExampleUnifiedGenotyper.scala
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@ -1,3 +1,5 @@
package org.broadinstitute.sting.queue.qscripts.examples
import org.broadinstitute.sting.queue.QScript
import org.broadinstitute.sting.queue.extensions.gatk._

2
public/scala/qscript/examples/HelloWorld.scala → public/scala/qscript/org/broadinstitute/sting/queue/qscripts/examples/HelloWorld.scala
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@ -1,3 +1,5 @@
package org.broadinstitute.sting.queue.qscripts.examples
import org.broadinstitute.sting.queue.QScript
class HelloWorld extends QScript {

2
public/scala/qscript/lib/Vcf2Table.q → public/scala/qscript/org/broadinstitute/sting/queue/qscripts/lib/Vcf2Table.q
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@ -1,3 +1,5 @@
package org.broadinstitute.sting.queue.qscripts.lib
import org.broadinstitute.sting.commandline.Hidden
import org.broadinstitute.sting.queue.extensions.gatk.{RodBind, VariantsToTable}
import org.broadinstitute.sting.queue.QScript