diff --git a/java/test/org/broadinstitute/sting/BaseTest.java b/java/test/org/broadinstitute/sting/BaseTest.java index b6c206522..36bdc8b56 100755 --- a/java/test/org/broadinstitute/sting/BaseTest.java +++ b/java/test/org/broadinstitute/sting/BaseTest.java @@ -112,12 +112,10 @@ public abstract class BaseTest { foundString = true; } - @Override public void close() { // do nothing } - @Override public boolean requiresLayout() { return false; } diff --git a/java/test/org/broadinstitute/sting/playground/gatk/walkers/validation/RodSystemValidationIntegrationTest.java b/java/test/org/broadinstitute/sting/playground/gatk/walkers/validation/RodSystemValidationIntegrationTest.java index e6a7a61f4..379bd6654 100644 --- a/java/test/org/broadinstitute/sting/playground/gatk/walkers/validation/RodSystemValidationIntegrationTest.java +++ b/java/test/org/broadinstitute/sting/playground/gatk/walkers/validation/RodSystemValidationIntegrationTest.java @@ -41,6 +41,16 @@ public class RodSystemValidationIntegrationTest extends WalkerTest { executeTest("testComplexVCFPileup", spec); } + @Test + public void testBTIWithROD() { + WalkerTestSpec spec = new WalkerTestSpec( + baseTestString1KG() + " -B eval,VCF," + validationDataLocation + "MultiSample.vcf" + + " -B eval2,VCF," + validationDataLocation + "NA12878.chr1_10mb_11mb.slx.indels.vcf4" + " -BTI eval" + , 1, + Arrays.asList("ccfc0389a3c614f7892dbe972543f0ec")); + executeTest("testBTIWithROD", spec); + } + @Test public void testLargeComplexVCFPileup() { WalkerTestSpec spec = new WalkerTestSpec(