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adding tests for BTI in the ROD validation tests 

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3997 348d0f76-0448-11de-a6fe-93d51630548a
This commit is contained in:
aaron 2010-08-10 06:05:40 +00:00
parent ca5b274f16
commit d514c424fd
2 changed files with 10 additions and 2 deletions
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2
java/test/org/broadinstitute/sting/BaseTest.java
View File

@ -112,12 +112,10 @@ public abstract class BaseTest {
foundString = true;
}
@Override
public void close() {
// do nothing
}
@Override
public boolean requiresLayout() {
return false;
}

10
java/test/org/broadinstitute/sting/playground/gatk/walkers/validation/RodSystemValidationIntegrationTest.java
View File

@ -41,6 +41,16 @@ public class RodSystemValidationIntegrationTest extends WalkerTest {
executeTest("testComplexVCFPileup", spec);
}
@Test
public void testBTIWithROD() {
WalkerTestSpec spec = new WalkerTestSpec(
baseTestString1KG() + " -B eval,VCF," + validationDataLocation + "MultiSample.vcf" +
" -B eval2,VCF," + validationDataLocation + "NA12878.chr1_10mb_11mb.slx.indels.vcf4" + " -BTI eval"
, 1,
Arrays.asList("ccfc0389a3c614f7892dbe972543f0ec"));
executeTest("testBTIWithROD", spec);
}
@Test
public void testLargeComplexVCFPileup() {
WalkerTestSpec spec = new WalkerTestSpec(