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Merge pull request #1582 from broadinstitute/SC-input-prior-HC-doc-fix 

Change AC>1 to AC>0
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ldgauthier 2017-05-09 14:15:42 -04:00 committed by GitHub
parent 00b7135afe 8703642142
commit d512f3f808
1 changed files with 1 additions and 1 deletions
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protected/gatk-tools-protected/src/main/java/org/broadinstitute/gatk/engine/arguments/GenotypeCalculationArgumentCollection.java
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@ -174,7 +174,7 @@ public class GenotypeCalculationArgumentCollection implements Cloneable{
* However, there are instances where using this prior might not be desirable, e.g. for population studies where prior * However, there are instances where using this prior might not be desirable, e.g. for population studies where prior
* might not be appropriate, as for example when the ancestral status of the reference allele is not known. * might not be appropriate, as for example when the ancestral status of the reference allele is not known.
* *
* This argument allows you to manually specify a list of probabilities for each AC>1 to be used as * This argument allows you to manually specify a list of probabilities for each AC>0 to be used as
* priors for genotyping, with the following restrictions: only diploid calls are supported; you must specify 2 * * priors for genotyping, with the following restrictions: only diploid calls are supported; you must specify 2 *
* N values where N is the number of samples; probability values must be positive and specified in Double format, * N values where N is the number of samples; probability values must be positive and specified in Double format,
* in linear space (not log10 space nor Phred-scale); and all values must sume to 1. * in linear space (not log10 space nor Phred-scale); and all values must sume to 1.