From d487428468dcc5ce79b53fd49f6b459b1c1cdd34 Mon Sep 17 00:00:00 2001
From: aaron <aaron@348d0f76-0448-11de-a6fe-93d51630548a>
Date: Wed, 2 Dec 2009 06:46:32 +0000
Subject: [PATCH] remove incorrect parentheses

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2211 348d0f76-0448-11de-a6fe-93d51630548a
---
 .../gatk/walkers/papergenotyper/GATKPaperGenotyper.java         | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/java/src/org/broadinstitute/sting/playground/gatk/walkers/papergenotyper/GATKPaperGenotyper.java b/java/src/org/broadinstitute/sting/playground/gatk/walkers/papergenotyper/GATKPaperGenotyper.java
index 153797312..6219a0a13 100644
--- a/java/src/org/broadinstitute/sting/playground/gatk/walkers/papergenotyper/GATKPaperGenotyper.java
+++ b/java/src/org/broadinstitute/sting/playground/gatk/walkers/papergenotyper/GATKPaperGenotyper.java
@@ -55,7 +55,7 @@ public class GATKPaperGenotyper extends LocusWalker<SimpleCall, Integer> impleme
                     byte pileupBase = bases[index];
                     for (char genotypeBase : genotype.toString().toCharArray())
                         if (genotypeBase == pileupBase)
-                            likelihoods[genotype.ordinal()] += Math.log10(0.5 * ((1 - epsilon) + epsilon / 3));
+                            likelihoods[genotype.ordinal()] += Math.log10(0.5 * (1 - epsilon) + epsilon / 3);
                         else
                             likelihoods[genotype.ordinal()] += Math.log10(epsilon / 3);
                 }