diff --git a/java/src/org/broadinstitute/sting/playground/gatk/walkers/papergenotyper/GATKPaperGenotyper.java b/java/src/org/broadinstitute/sting/playground/gatk/walkers/papergenotyper/GATKPaperGenotyper.java index 153797312..6219a0a13 100644 --- a/java/src/org/broadinstitute/sting/playground/gatk/walkers/papergenotyper/GATKPaperGenotyper.java +++ b/java/src/org/broadinstitute/sting/playground/gatk/walkers/papergenotyper/GATKPaperGenotyper.java @@ -55,7 +55,7 @@ public class GATKPaperGenotyper extends LocusWalker impleme byte pileupBase = bases[index]; for (char genotypeBase : genotype.toString().toCharArray()) if (genotypeBase == pileupBase) - likelihoods[genotype.ordinal()] += Math.log10(0.5 * ((1 - epsilon) + epsilon / 3)); + likelihoods[genotype.ordinal()] += Math.log10(0.5 * (1 - epsilon) + epsilon / 3); else likelihoods[genotype.ordinal()] += Math.log10(epsilon / 3); }