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Very naughty bug: VE output is not at all gatherable but no one told this to Queue. Fixed.

This commit is contained in:
Eric Banks 2012-05-15 10:29:04 -04:00
parent 819c3d0c15
commit d44886d9e8
1 changed files with 2 additions and 5 deletions
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7
public/java/src/org/broadinstitute/sting/gatk/walkers/varianteval/VariantEvalWalker.java
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@ -12,12 +12,8 @@ import org.broadinstitute.sting.gatk.arguments.DbsnpArgumentCollection;
import org.broadinstitute.sting.gatk.contexts.AlignmentContext; import org.broadinstitute.sting.gatk.contexts.AlignmentContext;
import org.broadinstitute.sting.gatk.contexts.ReferenceContext; import org.broadinstitute.sting.gatk.contexts.ReferenceContext;
import org.broadinstitute.sting.gatk.refdata.RefMetaDataTracker; import org.broadinstitute.sting.gatk.refdata.RefMetaDataTracker;
import org.broadinstitute.sting.gatk.walkers.Reference; import org.broadinstitute.sting.gatk.walkers.*;
import org.broadinstitute.sting.gatk.walkers.RodWalker;
import org.broadinstitute.sting.gatk.walkers.TreeReducible;
import org.broadinstitute.sting.gatk.walkers.Window;
import org.broadinstitute.sting.gatk.walkers.varianteval.evaluators.VariantEvaluator; import org.broadinstitute.sting.gatk.walkers.varianteval.evaluators.VariantEvaluator;
import org.broadinstitute.sting.gatk.walkers.varianteval.stratifications.DynamicStratification;
import org.broadinstitute.sting.gatk.walkers.varianteval.stratifications.IntervalStratification; import org.broadinstitute.sting.gatk.walkers.varianteval.stratifications.IntervalStratification;
import org.broadinstitute.sting.gatk.walkers.varianteval.stratifications.VariantStratifier; import org.broadinstitute.sting.gatk.walkers.varianteval.stratifications.VariantStratifier;
import org.broadinstitute.sting.gatk.walkers.varianteval.stratifications.manager.StratificationManager; import org.broadinstitute.sting.gatk.walkers.varianteval.stratifications.manager.StratificationManager;
@ -91,6 +87,7 @@ import java.util.*;
* *
*/ */
@Reference(window=@Window(start=-50, stop=50)) @Reference(window=@Window(start=-50, stop=50))
@PartitionBy(PartitionType.NONE)
public class VariantEvalWalker extends RodWalker<Integer, Integer> implements TreeReducible<Integer> { public class VariantEvalWalker extends RodWalker<Integer, Integer> implements TreeReducible<Integer> {
public static final String IS_SINGLETON_KEY = "ISSINGLETON"; public static final String IS_SINGLETON_KEY = "ISSINGLETON";