From d44886d9e89c54872478c6aa2e339cbc8686cd06 Mon Sep 17 00:00:00 2001 From: Eric Banks Date: Tue, 15 May 2012 10:29:04 -0400 Subject: [PATCH] Very naughty bug: VE output is not at all gatherable but no one told this to Queue. Fixed. --- .../sting/gatk/walkers/varianteval/VariantEvalWalker.java | 7 ++----- 1 file changed, 2 insertions(+), 5 deletions(-) diff --git a/public/java/src/org/broadinstitute/sting/gatk/walkers/varianteval/VariantEvalWalker.java b/public/java/src/org/broadinstitute/sting/gatk/walkers/varianteval/VariantEvalWalker.java index a73bc2c70..5fa95b22e 100755 --- a/public/java/src/org/broadinstitute/sting/gatk/walkers/varianteval/VariantEvalWalker.java +++ b/public/java/src/org/broadinstitute/sting/gatk/walkers/varianteval/VariantEvalWalker.java @@ -12,12 +12,8 @@ import org.broadinstitute.sting.gatk.arguments.DbsnpArgumentCollection; import org.broadinstitute.sting.gatk.contexts.AlignmentContext; import org.broadinstitute.sting.gatk.contexts.ReferenceContext; import org.broadinstitute.sting.gatk.refdata.RefMetaDataTracker; -import org.broadinstitute.sting.gatk.walkers.Reference; -import org.broadinstitute.sting.gatk.walkers.RodWalker; -import org.broadinstitute.sting.gatk.walkers.TreeReducible; -import org.broadinstitute.sting.gatk.walkers.Window; +import org.broadinstitute.sting.gatk.walkers.*; import org.broadinstitute.sting.gatk.walkers.varianteval.evaluators.VariantEvaluator; -import org.broadinstitute.sting.gatk.walkers.varianteval.stratifications.DynamicStratification; import org.broadinstitute.sting.gatk.walkers.varianteval.stratifications.IntervalStratification; import org.broadinstitute.sting.gatk.walkers.varianteval.stratifications.VariantStratifier; import org.broadinstitute.sting.gatk.walkers.varianteval.stratifications.manager.StratificationManager; @@ -91,6 +87,7 @@ import java.util.*; * */ @Reference(window=@Window(start=-50, stop=50)) +@PartitionBy(PartitionType.NONE) public class VariantEvalWalker extends RodWalker implements TreeReducible { public static final String IS_SINGLETON_KEY = "ISSINGLETON";