From d3f0c5194481cb684c597fb4d7bebb1fdf2fb38d Mon Sep 17 00:00:00 2001 From: depristo Date: Sun, 21 Jun 2009 14:10:02 +0000 Subject: [PATCH] longer update times so we don't overwhelm when running genome-wide git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1067 348d0f76-0448-11de-a6fe-93d51630548a --- .../broadinstitute/sting/gatk/traversals/TraversalEngine.java | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/java/src/org/broadinstitute/sting/gatk/traversals/TraversalEngine.java b/java/src/org/broadinstitute/sting/gatk/traversals/TraversalEngine.java index def577bb7..daac3f8fe 100755 --- a/java/src/org/broadinstitute/sting/gatk/traversals/TraversalEngine.java +++ b/java/src/org/broadinstitute/sting/gatk/traversals/TraversalEngine.java @@ -37,7 +37,8 @@ public abstract class TraversalEngine { protected long lastProgressPrintTime = -1; // When was the last time we printed our progress? // How long can we go without printing some progress info? - protected long MAX_PROGRESS_PRINT_TIME = 10 * 1000; // 10 seconds in millisecs + protected long MAX_PROGRESS_PRINT_TIME = 30 * 1000; // 10 seconds in millisecs + protected long N_RECORDS_TO_PRINT = 1000000; // Maximum number of reads to process before finishing protected long maxReads = -1; @@ -70,7 +71,6 @@ public abstract class TraversalEngine { protected int maxOnFlySorts = 100000; protected double downsamplingFraction = 1.0; protected int downsamplingCoverage = 0; - protected long N_RECORDS_TO_PRINT = 100000; protected boolean THREADED_IO = false; protected int THREADED_IO_BUFFER_SIZE = 10000; protected boolean filterZeroMappingQualityReads = false;