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longer update times so we don't overwhelm when running genome-wide 

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1067 348d0f76-0448-11de-a6fe-93d51630548a
This commit is contained in:
depristo 2009-06-21 14:10:02 +00:00
parent a21c2a7e48
commit d3f0c51944
1 changed files with 2 additions and 2 deletions
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4
java/src/org/broadinstitute/sting/gatk/traversals/TraversalEngine.java
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@ -37,7 +37,8 @@ public abstract class TraversalEngine {
protected long lastProgressPrintTime = -1; // When was the last time we printed our progress?
// How long can we go without printing some progress info?
protected long MAX_PROGRESS_PRINT_TIME = 10 * 1000; // 10 seconds in millisecs
protected long MAX_PROGRESS_PRINT_TIME = 30 * 1000; // 10 seconds in millisecs
protected long N_RECORDS_TO_PRINT = 1000000;
// Maximum number of reads to process before finishing
protected long maxReads = -1;
@ -70,7 +71,6 @@ public abstract class TraversalEngine {
protected int maxOnFlySorts = 100000;
protected double downsamplingFraction = 1.0;
protected int downsamplingCoverage = 0;
protected long N_RECORDS_TO_PRINT = 100000;
protected boolean THREADED_IO = false;
protected int THREADED_IO_BUFFER_SIZE = 10000;
protected boolean filterZeroMappingQualityReads = false;