From d393f59ad2f2dc42b1a1b2a8675ae13ec64efd0b Mon Sep 17 00:00:00 2001 From: ebanks Date: Wed, 25 May 2011 17:48:59 +0000 Subject: [PATCH] Moving the hg19 reference to a new location as per instruction from our intrepid leader git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5875 348d0f76-0448-11de-a6fe-93d51630548a --- scala/qscript/core/GATKResourcesBundle.scala | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/scala/qscript/core/GATKResourcesBundle.scala b/scala/qscript/core/GATKResourcesBundle.scala index d37206c68..5b9ce90c8 100755 --- a/scala/qscript/core/GATKResourcesBundle.scala +++ b/scala/qscript/core/GATKResourcesBundle.scala @@ -100,7 +100,7 @@ class GATKResourcesBundle extends QScript { // // references // - hg19 = new Reference("hg19", new File("/humgen/gsa-hpprojects/GATK/bundle/ucsc.hg19/ucsc.hg19.fasta")) + hg19 = new Reference("hg19", new File("/humgen/gsa-hpprojects/GATK/data/ucsc.hg19/ucsc.hg19.fasta")) b37 = new Reference("b37", new File("/humgen/1kg/reference/human_g1k_v37.fasta")) hg18 = new Reference("hg18", new File("/seq/references/Homo_sapiens_assembly18/v0/Homo_sapiens_assembly18.fasta")) b36 = new Reference("b36", new File("/humgen/1kg/reference/human_b36_both.fasta"))