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fix a snp mask offset error. 

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1783 348d0f76-0448-11de-a6fe-93d51630548a
This commit is contained in:
jmaguire 2009-10-08 12:25:40 +00:00
parent 829e99413b
commit d38a0d04b9
1 changed files with 1 additions and 1 deletions
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2
java/src/org/broadinstitute/sting/playground/gatk/walkers/PickSequenomProbes.java
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@ -68,7 +68,7 @@ public class PickSequenomProbes extends RefWalker<String, String>
long offset = context.getLocation().getStart();
char[] context_bases = ref.getBases();
long true_offset = offset - 400;
long true_offset = offset - 200;
for (long i = 0; i < 401; i++)
{
GenomeLoc loc = GenomeLocParser.parseGenomeLoc(context.getLocation().getContig() + ":" + true_offset + "-" + true_offset);