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adding GLF rods to the module list 

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1252 348d0f76-0448-11de-a6fe-93d51630548a
This commit is contained in:
aaron 2009-07-15 15:42:34 +00:00
parent 9ecb3e0015
commit d36e232ed3
1 changed files with 8 additions and 10 deletions
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18
java/src/org/broadinstitute/sting/gatk/refdata/ReferenceOrderedData.java
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@ -1,21 +1,18 @@
package org.broadinstitute.sting.gatk.refdata; package org.broadinstitute.sting.gatk.refdata;
import org.apache.log4j.Logger;
import org.broadinstitute.sting.utils.MalformedGenomeLocException;
import org.broadinstitute.sting.utils.Utils;
import org.broadinstitute.sting.utils.xReadLines;
import java.io.File; import java.io.File;
import java.io.FileNotFoundException;
import java.io.FileWriter; import java.io.FileWriter;
import java.io.IOException; import java.io.IOException;
import java.io.FileNotFoundException;
import java.util.*;
import java.lang.reflect.Constructor; import java.lang.reflect.Constructor;
import java.lang.reflect.InvocationTargetException; import java.lang.reflect.InvocationTargetException;
import java.lang.reflect.Method; import java.lang.reflect.Method;
import java.util.*;
import org.broadinstitute.sting.gatk.iterators.PushbackIterator;
import org.broadinstitute.sting.gatk.refdata.rodRefSeq;
import org.broadinstitute.sting.utils.GenomeLoc;
import org.broadinstitute.sting.utils.xReadLines;
import org.broadinstitute.sting.utils.Utils;
import org.broadinstitute.sting.utils.MalformedGenomeLocException;
import org.apache.log4j.Logger;
/** /**
* Class for representing arbitrary reference ordered data sets * Class for representing arbitrary reference ordered data sets
@ -72,6 +69,7 @@ public class ReferenceOrderedData<ROD extends ReferenceOrderedDatum> implements
addModule("HapMapGenotype", HapMapGenotypeROD.class); addModule("HapMapGenotype", HapMapGenotypeROD.class);
addModule("Intervals", IntervalRod.class); addModule("Intervals", IntervalRod.class);
addModule("Variants", rodVariants.class); addModule("Variants", rodVariants.class);
addModule("GFF", RodGLF.class);
} }