From d36e232ed3e01036b3cadd82b69f2d403b35fd53 Mon Sep 17 00:00:00 2001
From: aaron <aaron@348d0f76-0448-11de-a6fe-93d51630548a>
Date: Wed, 15 Jul 2009 15:42:34 +0000
Subject: [PATCH] adding GLF rods to the module list

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1252 348d0f76-0448-11de-a6fe-93d51630548a
---
 .../gatk/refdata/ReferenceOrderedData.java     | 18 ++++++++----------
 1 file changed, 8 insertions(+), 10 deletions(-)

diff --git a/java/src/org/broadinstitute/sting/gatk/refdata/ReferenceOrderedData.java b/java/src/org/broadinstitute/sting/gatk/refdata/ReferenceOrderedData.java
index feec5711a..1a3c4d30c 100644
--- a/java/src/org/broadinstitute/sting/gatk/refdata/ReferenceOrderedData.java
+++ b/java/src/org/broadinstitute/sting/gatk/refdata/ReferenceOrderedData.java
@@ -1,21 +1,18 @@
 package org.broadinstitute.sting.gatk.refdata;
 
+import org.apache.log4j.Logger;
+import org.broadinstitute.sting.utils.MalformedGenomeLocException;
+import org.broadinstitute.sting.utils.Utils;
+import org.broadinstitute.sting.utils.xReadLines;
+
 import java.io.File;
+import java.io.FileNotFoundException;
 import java.io.FileWriter;
 import java.io.IOException;
-import java.io.FileNotFoundException;
-import java.util.*;
 import java.lang.reflect.Constructor;
 import java.lang.reflect.InvocationTargetException;
 import java.lang.reflect.Method;
-
-import org.broadinstitute.sting.gatk.iterators.PushbackIterator;
-import org.broadinstitute.sting.gatk.refdata.rodRefSeq;
-import org.broadinstitute.sting.utils.GenomeLoc;
-import org.broadinstitute.sting.utils.xReadLines;
-import org.broadinstitute.sting.utils.Utils;
-import org.broadinstitute.sting.utils.MalformedGenomeLocException;
-import org.apache.log4j.Logger;
+import java.util.*;
 
 /**
  * Class for representing arbitrary reference ordered data sets
@@ -72,6 +69,7 @@ public class ReferenceOrderedData<ROD extends ReferenceOrderedDatum> implements
         addModule("HapMapGenotype", HapMapGenotypeROD.class);
         addModule("Intervals", IntervalRod.class);
         addModule("Variants", rodVariants.class);
+        addModule("GFF", RodGLF.class);
     }