diff --git a/java/src/org/broadinstitute/sting/gatk/refdata/ReferenceOrderedData.java b/java/src/org/broadinstitute/sting/gatk/refdata/ReferenceOrderedData.java index feec5711a..1a3c4d30c 100644 --- a/java/src/org/broadinstitute/sting/gatk/refdata/ReferenceOrderedData.java +++ b/java/src/org/broadinstitute/sting/gatk/refdata/ReferenceOrderedData.java @@ -1,21 +1,18 @@ package org.broadinstitute.sting.gatk.refdata; +import org.apache.log4j.Logger; +import org.broadinstitute.sting.utils.MalformedGenomeLocException; +import org.broadinstitute.sting.utils.Utils; +import org.broadinstitute.sting.utils.xReadLines; + import java.io.File; +import java.io.FileNotFoundException; import java.io.FileWriter; import java.io.IOException; -import java.io.FileNotFoundException; -import java.util.*; import java.lang.reflect.Constructor; import java.lang.reflect.InvocationTargetException; import java.lang.reflect.Method; - -import org.broadinstitute.sting.gatk.iterators.PushbackIterator; -import org.broadinstitute.sting.gatk.refdata.rodRefSeq; -import org.broadinstitute.sting.utils.GenomeLoc; -import org.broadinstitute.sting.utils.xReadLines; -import org.broadinstitute.sting.utils.Utils; -import org.broadinstitute.sting.utils.MalformedGenomeLocException; -import org.apache.log4j.Logger; +import java.util.*; /** * Class for representing arbitrary reference ordered data sets @@ -72,6 +69,7 @@ public class ReferenceOrderedData implements addModule("HapMapGenotype", HapMapGenotypeROD.class); addModule("Intervals", IntervalRod.class); addModule("Variants", rodVariants.class); + addModule("GFF", RodGLF.class); }