From d30e2b390a7d8bc20b1684425ffc68143696e6c3 Mon Sep 17 00:00:00 2001
From: kshakir <kshakir@348d0f76-0448-11de-a6fe-93d51630548a>
Date: Fri, 15 Jan 2010 21:17:23 +0000
Subject: [PATCH] Remove several walkers that won't be used in the
 GATK-GSA-Pipeline.jar.

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2602 348d0f76-0448-11de-a6fe-93d51630548a
---
 packages/GATK-GSA-Pipeline.xml | 6 ------
 1 file changed, 6 deletions(-)

diff --git a/packages/GATK-GSA-Pipeline.xml b/packages/GATK-GSA-Pipeline.xml
index 843a23dc4..7ca07ad7c 100644
--- a/packages/GATK-GSA-Pipeline.xml
+++ b/packages/GATK-GSA-Pipeline.xml
@@ -8,12 +8,6 @@
     <main-class>org.broadinstitute.sting.gatk.CommandLineGATK</main-class>
     <dependencies>
       <package>org.broadinstitute.sting.gatk.filters</package>
-      <class>org.broadinstitute.sting.gatk.walkers.coverage.DepthOfCoverageWalker</class>
-      <class>org.broadinstitute.sting.gatk.walkers.PileupWalker</class>
-      <class>org.broadinstitute.sting.gatk.walkers.PrintReadsWalker</class>
-      <class>org.broadinstitute.sting.gatk.walkers.qc.CountLociWalker</class>
-      <class>org.broadinstitute.sting.gatk.walkers.qc.CountReadsWalker</class>
-      <class>org.broadinstitute.sting.gatk.walkers.qc.ValidatingPileupWalker</class>
       <!-- Quality scores recalibration -->
       <class>org.broadinstitute.sting.gatk.walkers.recalibration.CovariateCounterWalker</class>
       <class>org.broadinstitute.sting.gatk.walkers.recalibration.TableRecalibrationWalker</class>