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Remove several walkers that won't be used in the GATK-GSA-Pipeline.jar. 

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2602 348d0f76-0448-11de-a6fe-93d51630548a
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kshakir 2010-01-15 21:17:23 +00:00
parent 7a991421f7
commit d30e2b390a
1 changed files with 0 additions and 6 deletions
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6
packages/GATK-GSA-Pipeline.xml
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@ -8,12 +8,6 @@
<main-class>org.broadinstitute.sting.gatk.CommandLineGATK</main-class>
<dependencies>
<package>org.broadinstitute.sting.gatk.filters</package>
<class>org.broadinstitute.sting.gatk.walkers.coverage.DepthOfCoverageWalker</class>
<class>org.broadinstitute.sting.gatk.walkers.PileupWalker</class>
<class>org.broadinstitute.sting.gatk.walkers.PrintReadsWalker</class>
<class>org.broadinstitute.sting.gatk.walkers.qc.CountLociWalker</class>
<class>org.broadinstitute.sting.gatk.walkers.qc.CountReadsWalker</class>
<class>org.broadinstitute.sting.gatk.walkers.qc.ValidatingPileupWalker</class>
<!-- Quality scores recalibration -->
<class>org.broadinstitute.sting.gatk.walkers.recalibration.CovariateCounterWalker</class>
<class>org.broadinstitute.sting.gatk.walkers.recalibration.TableRecalibrationWalker</class>