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Merge branch 'master' of ssh://gsa2.broadinstitute.org/humgen/gsa-scr1/gsa-engineering/git/unstable

This commit is contained in:
Eric Banks 2012-08-06 15:06:45 -04:00
parent 4b5e1aed1f 00858f16a6
commit d2feb5d742
1 changed files with 0 additions and 64 deletions
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public/java/test/org/broadinstitute/sting/utils/recalibration/AdaptiveContextUnitTest.java
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package org.broadinstitute.sting.utils.recalibration;
import org.broadinstitute.sting.BaseTest;
import org.testng.annotations.DataProvider;
import org.testng.annotations.Test;
/**
* User: depristo
* Date: 8/3/12
* Time: 12:26 PM
* To change this template use File | Settings | File Templates.
*/
public class AdaptiveContextUnitTest {
// TODO
// TODO actually need unit tests when we have validated the value of this approach
// TODO particularly before we attempt to optimize the algorithm
// TODO
// --------------------------------------------------------------------------------
//
// Provider
//
// --------------------------------------------------------------------------------
private class AdaptiveContextTestProvider extends BaseTest.TestDataProvider {
final RecalDatumNode<ContextDatum> pruned;
final RecalDatumNode<ContextDatum> full;
private AdaptiveContextTestProvider(Class c, RecalDatumNode<ContextDatum> pruned, RecalDatumNode<ContextDatum> full) {
super(AdaptiveContextTestProvider.class);
this.pruned = pruned;
this.full = full;
}
}
private RecalDatumNode<ContextDatum> makeTree(final String context, final int N, final int M,
final RecalDatumNode<ContextDatum> ... sub) {
final ContextDatum contextDatum = new ContextDatum(context, N, M);
final RecalDatumNode<ContextDatum> node = new RecalDatumNode<ContextDatum>(contextDatum);
for ( final RecalDatumNode<ContextDatum> sub1 : sub ) {
node.addSubnode(sub1);
}
return node;
}
@DataProvider(name = "AdaptiveContextTestProvider")
public Object[][] makeRecalDatumTestProvider() {
// final RecalDatumNode<ContextDatum> prune1 =
// makeTree("A", 10, 1,
// makeTree("AA", 11, 2),
// makeTree("AC", 12, 3),
// makeTree("AG", 13, 4),
// makeTree("AT", 14, 5));
//
// new AdaptiveContextTestProvider(pruned, full);
return AdaptiveContextTestProvider.getTests(AdaptiveContextTestProvider.class);
}
@Test(dataProvider = "AdaptiveContextTestProvider")
public void testAdaptiveContextFill(AdaptiveContextTestProvider cfg) {
}
}