From d2142c3aa7656a639d075b78d5235efd55e04a08 Mon Sep 17 00:00:00 2001 From: Eric Banks Date: Tue, 10 Apr 2012 22:40:38 -0400 Subject: [PATCH] Adding integration test for Flag Stat --- .../gatk/walkers/FlagStatIntegrationTest.java | 20 +++++++++++++++++++ 1 file changed, 20 insertions(+) create mode 100755 public/java/test/org/broadinstitute/sting/gatk/walkers/FlagStatIntegrationTest.java diff --git a/public/java/test/org/broadinstitute/sting/gatk/walkers/FlagStatIntegrationTest.java b/public/java/test/org/broadinstitute/sting/gatk/walkers/FlagStatIntegrationTest.java new file mode 100755 index 000000000..d2acaa588 --- /dev/null +++ b/public/java/test/org/broadinstitute/sting/gatk/walkers/FlagStatIntegrationTest.java @@ -0,0 +1,20 @@ +package org.broadinstitute.sting.gatk.walkers; + +import org.broadinstitute.sting.WalkerTest; +import org.testng.annotations.Test; + +import java.util.Arrays; + +public class FlagStatIntegrationTest extends WalkerTest { + + @Test + public void testFlagStat() { + String md5 = "9c4039662f24bfd23ccf67973cb5df29"; + + WalkerTestSpec spec = new WalkerTestSpec( + "-T FlagStat -R " + b36KGReference + " -I " + validationDataLocation + "NA12878.1kg.p2.chr1_10mb_11_mb.SLX.bam -L 1:10,000,000-10,050,000 -o %s", + 1, + Arrays.asList(md5)); + executeTest("test flag stat", spec); + } +}