From d2078f09b2b8687db1f990da23c9f0d43e6c1b85 Mon Sep 17 00:00:00 2001 From: Mark DePristo Date: Thu, 4 Aug 2011 12:47:55 -0400 Subject: [PATCH] Minor fixes to ITs --- .../recalibration/RecalibrationWalkersIntegrationTest.java | 2 +- .../gatk/walkers/varianteval/VariantEvalIntegrationTest.java | 2 +- 2 files changed, 2 insertions(+), 2 deletions(-) diff --git a/public/java/test/org/broadinstitute/sting/gatk/walkers/recalibration/RecalibrationWalkersIntegrationTest.java b/public/java/test/org/broadinstitute/sting/gatk/walkers/recalibration/RecalibrationWalkersIntegrationTest.java index f87b43dfa..74f803ac6 100755 --- a/public/java/test/org/broadinstitute/sting/gatk/walkers/recalibration/RecalibrationWalkersIntegrationTest.java +++ b/public/java/test/org/broadinstitute/sting/gatk/walkers/recalibration/RecalibrationWalkersIntegrationTest.java @@ -312,7 +312,7 @@ public class RecalibrationWalkersIntegrationTest extends WalkerTest { WalkerTest.WalkerTestSpec spec = new WalkerTest.WalkerTestSpec( "-R " + b36KGReference + - " -B:dbsnp,vcf " + + " -B:dbsnp,vcf " + b36dbSNP129 + " -T CountCovariates" + " -I " + bam + " -cov ReadGroupCovariate" + diff --git a/public/java/test/org/broadinstitute/sting/gatk/walkers/varianteval/VariantEvalIntegrationTest.java b/public/java/test/org/broadinstitute/sting/gatk/walkers/varianteval/VariantEvalIntegrationTest.java index 38a852eb5..057491e1e 100755 --- a/public/java/test/org/broadinstitute/sting/gatk/walkers/varianteval/VariantEvalIntegrationTest.java +++ b/public/java/test/org/broadinstitute/sting/gatk/walkers/varianteval/VariantEvalIntegrationTest.java @@ -295,7 +295,7 @@ public class VariantEvalIntegrationTest extends WalkerTest { " -B:evalBI,VCF " + validationDataLocation + "VariantEval/ALL.20100201.chr20.bi.sites.vcf" + " -B:evalBC,VCF " + validationDataLocation + "VariantEval/ALL.20100201.chr20.bc.sites.vcf" + " -noST -ST Novelty -o %s"; - WalkerTestSpec spec = new WalkerTestSpec(extraArgs,1,Arrays.asList("79089484097614b7ab81bbc3ad3a892a")); + WalkerTestSpec spec = new WalkerTestSpec(extraArgs,1,Arrays.asList("79895904a3c2799e2e384a933d10f3fc")); executeTestParallel("testMultipleEvalTracksWithoutGenotypes",spec); }