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Merge branch 'master' of ssh://gsa3.broadinstitute.org/humgen/gsa-scr1/gsa-engineering/git/unstable

This commit is contained in:
Khalid Shakir 2011-07-11 19:19:54 -04:00
parent e93052a51e d6517adb42
commit d11155ce2e
3 changed files with 6 additions and 2 deletions
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0
public/java/src/org/broadinstitute/sting/gatk/refdata/features/table/TableCodec.java 100644 → 100755
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6
public/java/src/org/broadinstitute/sting/gatk/refdata/features/table/TableFeature.java 100644 → 100755
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@ -55,10 +55,14 @@ public class TableFeature implements Feature {
}
public List<String> getAllValues() {
return getValuesTo(values.size()-1);
return getValuesTo(values.size());
}
public List<String> getValuesTo(int columnPosition) {
return values.subList(0,columnPosition);
}
public List<String> getHeader() {
return keys;
}
}

2
public/java/src/org/broadinstitute/sting/utils/variantcontext/Allele.java
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@ -108,7 +108,7 @@ public class Allele implements Comparable<Allele> {
this.bases = bases;
if ( ! acceptableAlleleBases(bases) )
throw new IllegalArgumentException("Unexpected base in allele bases " + new String(bases));
throw new IllegalArgumentException("Unexpected base in allele bases \'" + new String(bases)+"\'");
}
private Allele(String bases, boolean isRef) {