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Got caught in the middle of a bad integration test, that was fixed in independent push. Moved test bam into testdata.

This commit is contained in:
Mark DePristo 2012-12-05 14:49:01 -05:00
parent 465694078e
commit d0cab795b7
1 changed files with 1 additions and 1 deletions
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2
protected/java/test/org/broadinstitute/sting/gatk/walkers/genotyper/UnifiedGenotyperIntegrationTest.java
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@ -436,7 +436,7 @@ public class UnifiedGenotyperIntegrationTest extends WalkerTest {
@Test
public void testNsInCigar() {
WalkerTest.WalkerTestSpec spec = new WalkerTest.WalkerTestSpec(
"-T UnifiedGenotyper -R " + b37KGReference + " --no_cmdline_in_header -I " + validationDataLocation + "testWithNs.bam -o %s -L 8:141813600-141813700 -out_mode EMIT_ALL_SITES", 1,
"-T UnifiedGenotyper -R " + b37KGReference + " --no_cmdline_in_header -I " + privateTestDir + "testWithNs.bam -o %s -L 8:141813600-141813700 -out_mode EMIT_ALL_SITES", 1,
Arrays.asList("32f18ba50406cd8c8069ba07f2f89558"));
executeTest("test calling on reads with Ns in CIGAR", spec);
}