diff --git a/java/test/org/broadinstitute/sting/gatk/walkers/genotyper/UnifiedGenotyperPerformanceTest.java b/java/test/org/broadinstitute/sting/gatk/walkers/genotyper/UnifiedGenotyperPerformanceTest.java
index 446483e07..771d32195 100755
--- a/java/test/org/broadinstitute/sting/gatk/walkers/genotyper/UnifiedGenotyperPerformanceTest.java
+++ b/java/test/org/broadinstitute/sting/gatk/walkers/genotyper/UnifiedGenotyperPerformanceTest.java
@@ -16,7 +16,7 @@ public class UnifiedGenotyperPerformanceTest extends WalkerTest {
                         " -L chr1:1-50,000,000" +
                         " -varout /dev/null",
                 0,
-                new ArrayList(0));
+                new ArrayList<String>(0));
         executeTest("testUnifiedGenotyperWholeGenome", spec);
     }
 
@@ -29,7 +29,7 @@ public class UnifiedGenotyperPerformanceTest extends WalkerTest {
                         " -L " + evaluationDataLocation + "whole_exome_agilent_designed_120.targets.chr1.interval_list" +
                         " -varout /dev/null",
                 0,
-                new ArrayList(0));
+                new ArrayList<String>(0));
         executeTest("testUnifiedGenotyperWholeExome", spec);
     }
 }
\ No newline at end of file
diff --git a/java/test/org/broadinstitute/sting/gatk/walkers/indels/IndelRealignerPerformanceTest.java b/java/test/org/broadinstitute/sting/gatk/walkers/indels/IndelRealignerPerformanceTest.java
new file mode 100755
index 000000000..8109b1da0
--- /dev/null
+++ b/java/test/org/broadinstitute/sting/gatk/walkers/indels/IndelRealignerPerformanceTest.java
@@ -0,0 +1,46 @@
+package org.broadinstitute.sting.gatk.walkers.indels;
+
+import org.broadinstitute.sting.WalkerTest;
+import org.junit.Test;
+
+import java.util.ArrayList;
+
+public class IndelRealignerPerformanceTest extends WalkerTest {
+    @Test
+    public void testRealigner() {
+
+        WalkerTestSpec spec1 = new WalkerTestSpec(
+                "-R " + seqLocation + "references/Homo_sapiens_assembly18/v0/Homo_sapiens_assembly18.fasta" +
+                        " -T IndelRealigner" +
+                        " -LOD 5" +
+                        " -maxConsensuses 100" +
+                        " -greedy 100" +
+                        " -D /humgen/gsa-hpprojects/GATK/data/dbsnp_129_hg18.rod" +
+                        " -I " + evaluationDataLocation + "NA12878.GAII.chr1.50MB.bam" +
+                        " -L chr1:1-5,650,000" +
+                        " -compress 1" +
+                        " -sort NO_SORT" +
+                        " -targetIntervals " + evaluationDataLocation + "NA12878.GAII.chr1.50MB.realigner.intervals" +
+                        " -O /dev/null",
+                 0,
+                new ArrayList<String>(0));
+        executeTest("testRealignerTargetCreatorWholeGenome", spec1);
+
+        WalkerTestSpec spec2 = new WalkerTestSpec(
+                "-R " + seqLocation + "references/Homo_sapiens_assembly18/v0/Homo_sapiens_assembly18.fasta" +
+                        " -T IndelRealigner" +
+                        " -LOD 5" +
+                        " -maxConsensuses 100" +
+                        " -greedy 100" +
+                        " -D /humgen/gsa-hpprojects/GATK/data/dbsnp_129_hg18.rod" +
+                        " -I " + evaluationDataLocation + "NA12878.ESP.WEx.chr1.bam" +
+                        " -L chr1:1-150,000,000" +
+                        " -compress 1" +
+                        " -sort NO_SORT" +
+                        " -targetIntervals " + evaluationDataLocation + "NA12878.ESP.WEx.chr1.realigner.intervals" +
+                        " -O /dev/null",
+                 0,
+                new ArrayList<String>(0));
+        executeTest("testRealignerTargetCreatorWholeExome", spec2);
+    }
+}
\ No newline at end of file
diff --git a/java/test/org/broadinstitute/sting/gatk/walkers/indels/RealignerTargetCreatorPerformanceTest.java b/java/test/org/broadinstitute/sting/gatk/walkers/indels/RealignerTargetCreatorPerformanceTest.java
new file mode 100755
index 000000000..21aa83a3b
--- /dev/null
+++ b/java/test/org/broadinstitute/sting/gatk/walkers/indels/RealignerTargetCreatorPerformanceTest.java
@@ -0,0 +1,34 @@
+package org.broadinstitute.sting.gatk.walkers.indels;
+
+import org.broadinstitute.sting.WalkerTest;
+import org.junit.Test;
+
+import java.util.ArrayList;
+
+public class RealignerTargetCreatorPerformanceTest extends WalkerTest {
+    @Test
+    public void testRealignerTargetCreator() {
+
+        WalkerTestSpec spec1 = new WalkerTestSpec(
+                "-R " + seqLocation + "references/Homo_sapiens_assembly18/v0/Homo_sapiens_assembly18.fasta" +
+                        " -T RealignerTargetCreator" +
+                        " -D /humgen/gsa-hpprojects/GATK/data/dbsnp_129_hg18.rod" +
+                        " -I " + evaluationDataLocation + "NA12878.GAII.chr1.50MB.bam" +
+                        " -L chr1:1-50,000,000" +
+                        " -o /dev/null",
+                 0,
+                new ArrayList<String>(0));
+        executeTest("testRealignerTargetCreatorWholeGenome", spec1);
+
+        WalkerTestSpec spec2 = new WalkerTestSpec(
+                "-R " + seqLocation + "references/Homo_sapiens_assembly18/v0/Homo_sapiens_assembly18.fasta" +
+                        " -T RealignerTargetCreator" +
+                        " -D /humgen/gsa-hpprojects/GATK/data/dbsnp_129_hg18.rod" +
+                        " -I " + evaluationDataLocation + "NA12878.ESP.WEx.chr1.bam" +
+                        " -L " + evaluationDataLocation + "whole_exome_agilent_designed_120.targets.chr1.interval_list" +
+                        " -o /dev/null",
+                 0,
+                new ArrayList<String>(0));
+        executeTest("testRealignerTargetCreatorWholeExome", spec2);
+    }
+}
\ No newline at end of file
diff --git a/java/test/org/broadinstitute/sting/gatk/walkers/recalibration/RecalibrationWalkersPerformanceTest.java b/java/test/org/broadinstitute/sting/gatk/walkers/recalibration/RecalibrationWalkersPerformanceTest.java
index d9340e8a1..26b0dda66 100755
--- a/java/test/org/broadinstitute/sting/gatk/walkers/recalibration/RecalibrationWalkersPerformanceTest.java
+++ b/java/test/org/broadinstitute/sting/gatk/walkers/recalibration/RecalibrationWalkersPerformanceTest.java
@@ -18,7 +18,7 @@ public class RecalibrationWalkersPerformanceTest extends WalkerTest {
                         " -OQ" +
                         " -recalFile /dev/null",
                 0,
-                new ArrayList(0));
+                new ArrayList<String>(0));
         executeTest("testCountCovariatesWholeGenome", spec);
     }
 
@@ -33,7 +33,7 @@ public class RecalibrationWalkersPerformanceTest extends WalkerTest {
                         " -OQ" +
                         " -recalFile /dev/null",
                 0,
-                new ArrayList(0));
+                new ArrayList<String>(0));
         executeTest("testCountCovariatesWholeExome", spec);
     }
 
@@ -48,7 +48,7 @@ public class RecalibrationWalkersPerformanceTest extends WalkerTest {
                         " -recalFile " + evaluationDataLocation + "NA12878.GAII.chr1.50MB.recal.csv" +
                         " -outputBam /dev/null",
                 0,
-                new ArrayList(0));
+                new ArrayList<String>(0));
         executeTest("testTableRecalibratorWholeGenome", spec);
     }
 
@@ -63,7 +63,7 @@ public class RecalibrationWalkersPerformanceTest extends WalkerTest {
                         " -recalFile " + evaluationDataLocation + "NA12878.ESP.WEx.chr1.recal.csv" +
                         " -outputBam /dev/null",
                 0,
-                new ArrayList(0));
+                new ArrayList<String>(0));
         executeTest("testTableRecalibratorWholeExome", spec);
     }
 }
\ No newline at end of file