From 546e7777fa1c8f6d091f75aa28e6ac490fbf3523 Mon Sep 17 00:00:00 2001 From: David Roazen Date: Fri, 1 Jul 2011 16:39:10 -0400 Subject: [PATCH] Re-fixing paths in pipeline tests after example qscripts got moved. --- .../pipeline/examples/ExampleCountLociPipelineTest.scala | 2 +- .../queue/pipeline/examples/HelloWorldPipelineTest.scala | 6 +++--- 2 files changed, 4 insertions(+), 4 deletions(-) diff --git a/public/scala/test/org/broadinstitute/sting/queue/pipeline/examples/ExampleCountLociPipelineTest.scala b/public/scala/test/org/broadinstitute/sting/queue/pipeline/examples/ExampleCountLociPipelineTest.scala index 09f80f2c3..1e6c93cff 100644 --- a/public/scala/test/org/broadinstitute/sting/queue/pipeline/examples/ExampleCountLociPipelineTest.scala +++ b/public/scala/test/org/broadinstitute/sting/queue/pipeline/examples/ExampleCountLociPipelineTest.scala @@ -35,7 +35,7 @@ class ExampleCountLociPipelineTest { val spec = new PipelineTestSpec spec.name = "countloci" spec.args = Array( - " -S public/scala/qscript/examples/ExampleCountLoci.scala", + " -S public/scala/qscript/org/broadinstitute/sting/queue/qscripts/examples/ExampleCountLoci.scala", " -R " + BaseTest.hg18Reference, " -I " + BaseTest.validationDataLocation + "small_bam_for_countloci.bam", " -o " + testOut).mkString diff --git a/public/scala/test/org/broadinstitute/sting/queue/pipeline/examples/HelloWorldPipelineTest.scala b/public/scala/test/org/broadinstitute/sting/queue/pipeline/examples/HelloWorldPipelineTest.scala index 37531e791..0871e769b 100644 --- a/public/scala/test/org/broadinstitute/sting/queue/pipeline/examples/HelloWorldPipelineTest.scala +++ b/public/scala/test/org/broadinstitute/sting/queue/pipeline/examples/HelloWorldPipelineTest.scala @@ -32,7 +32,7 @@ class HelloWorldPipelineTest { def testHelloWorld { val spec = new PipelineTestSpec spec.name = "HelloWorld" - spec.args = "-S public/scala/qscript/examples/HelloWorld.scala" + spec.args = "-S public/scala/qscript/org/broadinstitute/sting/queue/qscripts/examples/HelloWorld.scala" PipelineTest.executeTest(spec) } @@ -40,7 +40,7 @@ class HelloWorldPipelineTest { def testHelloWorldWithPrefix { val spec = new PipelineTestSpec spec.name = "HelloWorldWithPrefix" - spec.args = "-S public/scala/qscript/examples/HelloWorld.scala -jobPrefix HelloWorld" + spec.args = "-S public/scala/qscript/org/broadinstitute/sting/queue/qscripts/examples/HelloWorld.scala -jobPrefix HelloWorld" PipelineTest.executeTest(spec) } @@ -48,7 +48,7 @@ class HelloWorldPipelineTest { def testHelloWorldWithPriority { val spec = new PipelineTestSpec spec.name = "HelloWorldWithPriority" - spec.args = "-S public/scala/qscript/examples/HelloWorld.scala -jobPriority 100" + spec.args = "-S public/scala/qscript/org/broadinstitute/sting/queue/qscripts/examples/HelloWorld.scala -jobPriority 100" PipelineTest.executeTest(spec) } }