diff --git a/public/scala/test/org/broadinstitute/sting/queue/pipeline/examples/ExampleCountLociPipelineTest.scala b/public/scala/test/org/broadinstitute/sting/queue/pipeline/examples/ExampleCountLociPipelineTest.scala
index 09f80f2c3..1e6c93cff 100644
--- a/public/scala/test/org/broadinstitute/sting/queue/pipeline/examples/ExampleCountLociPipelineTest.scala
+++ b/public/scala/test/org/broadinstitute/sting/queue/pipeline/examples/ExampleCountLociPipelineTest.scala
@@ -35,7 +35,7 @@ class ExampleCountLociPipelineTest {
     val spec = new PipelineTestSpec
     spec.name = "countloci"
     spec.args = Array(
-      " -S public/scala/qscript/examples/ExampleCountLoci.scala",
+      " -S public/scala/qscript/org/broadinstitute/sting/queue/qscripts/examples/ExampleCountLoci.scala",
       " -R " + BaseTest.hg18Reference,
       " -I " + BaseTest.validationDataLocation + "small_bam_for_countloci.bam",
       " -o " + testOut).mkString
diff --git a/public/scala/test/org/broadinstitute/sting/queue/pipeline/examples/HelloWorldPipelineTest.scala b/public/scala/test/org/broadinstitute/sting/queue/pipeline/examples/HelloWorldPipelineTest.scala
index 37531e791..0871e769b 100644
--- a/public/scala/test/org/broadinstitute/sting/queue/pipeline/examples/HelloWorldPipelineTest.scala
+++ b/public/scala/test/org/broadinstitute/sting/queue/pipeline/examples/HelloWorldPipelineTest.scala
@@ -32,7 +32,7 @@ class HelloWorldPipelineTest {
   def testHelloWorld {
     val spec = new PipelineTestSpec
     spec.name = "HelloWorld"
-    spec.args = "-S public/scala/qscript/examples/HelloWorld.scala"
+    spec.args = "-S public/scala/qscript/org/broadinstitute/sting/queue/qscripts/examples/HelloWorld.scala"
     PipelineTest.executeTest(spec)
   }
 
@@ -40,7 +40,7 @@ class HelloWorldPipelineTest {
   def testHelloWorldWithPrefix {
     val spec = new PipelineTestSpec
     spec.name = "HelloWorldWithPrefix"
-    spec.args = "-S public/scala/qscript/examples/HelloWorld.scala -jobPrefix HelloWorld"
+    spec.args = "-S public/scala/qscript/org/broadinstitute/sting/queue/qscripts/examples/HelloWorld.scala -jobPrefix HelloWorld"
     PipelineTest.executeTest(spec)
   }
 
@@ -48,7 +48,7 @@ class HelloWorldPipelineTest {
   def testHelloWorldWithPriority {
     val spec = new PipelineTestSpec
     spec.name = "HelloWorldWithPriority"
-    spec.args = "-S public/scala/qscript/examples/HelloWorld.scala -jobPriority 100"
+    spec.args = "-S public/scala/qscript/org/broadinstitute/sting/queue/qscripts/examples/HelloWorld.scala -jobPriority 100"
     PipelineTest.executeTest(spec)
   }
 }