zzh
/
gatk-3.8
1
0
Fork 0
Code Issues Pull Requests Packages Projects Releases Wiki Activity

Merge branch 'master' of ssh://nickel.broadinstitute.org/humgen/gsa-scr1/gsa-engineering/git/stable

This commit is contained in:
Guillermo del Angel 2011-07-01 17:11:32 -04:00
parent 1c1cd373d8 546e7777fa
commit cfdece6dd8
2 changed files with 4 additions and 4 deletions
Show Stats Download Patch File Download Diff File Expand all files Collapse all files

2
public/scala/test/org/broadinstitute/sting/queue/pipeline/examples/ExampleCountLociPipelineTest.scala
View File

@ -35,7 +35,7 @@ class ExampleCountLociPipelineTest {
val spec = new PipelineTestSpec
spec.name = "countloci"
spec.args = Array(
" -S public/scala/qscript/examples/ExampleCountLoci.scala",
" -S public/scala/qscript/org/broadinstitute/sting/queue/qscripts/examples/ExampleCountLoci.scala",
" -R " + BaseTest.hg18Reference,
" -I " + BaseTest.validationDataLocation + "small_bam_for_countloci.bam",
" -o " + testOut).mkString

6
public/scala/test/org/broadinstitute/sting/queue/pipeline/examples/HelloWorldPipelineTest.scala
View File

@ -32,7 +32,7 @@ class HelloWorldPipelineTest {
def testHelloWorld {
val spec = new PipelineTestSpec
spec.name = "HelloWorld"
spec.args = "-S public/scala/qscript/examples/HelloWorld.scala"
spec.args = "-S public/scala/qscript/org/broadinstitute/sting/queue/qscripts/examples/HelloWorld.scala"
PipelineTest.executeTest(spec)
}
@ -40,7 +40,7 @@ class HelloWorldPipelineTest {
def testHelloWorldWithPrefix {
val spec = new PipelineTestSpec
spec.name = "HelloWorldWithPrefix"
spec.args = "-S public/scala/qscript/examples/HelloWorld.scala -jobPrefix HelloWorld"
spec.args = "-S public/scala/qscript/org/broadinstitute/sting/queue/qscripts/examples/HelloWorld.scala -jobPrefix HelloWorld"
PipelineTest.executeTest(spec)
}
@ -48,7 +48,7 @@ class HelloWorldPipelineTest {
def testHelloWorldWithPriority {
val spec = new PipelineTestSpec
spec.name = "HelloWorldWithPriority"
spec.args = "-S public/scala/qscript/examples/HelloWorld.scala -jobPriority 100"
spec.args = "-S public/scala/qscript/org/broadinstitute/sting/queue/qscripts/examples/HelloWorld.scala -jobPriority 100"
PipelineTest.executeTest(spec)
}
}