Some minor changes to in-process functions that nobody else uses. CGL now properly ignores no-calls for external VCFs.

2012-01-19 00:20:49 -05:00 · 2012-01-19 00:20:49 -05:00 · cf9b1d350a
parent ab8f499bc3
commit cf9b1d350a
2 changed files with 2 additions and 1 deletions
--- a/public/scala/src/org/broadinstitute/sting/queue/library/ipf/vcf/VCFExtractIntervals.scala
+++ b/public/scala/src/org/broadinstitute/sting/queue/library/ipf/vcf/VCFExtractIntervals.scala
@ -44,6 +44,7 @@ class VCFExtractIntervals(inVCF: File, outList: File, useFilterSites: Boolean) e
        }
      }
    }
+    out.printf("%s%n",cur)

    out.close
  }