diff --git a/public/scala/src/org/broadinstitute/sting/queue/library/ipf/vcf/VCFExtractIntervals.scala b/public/scala/src/org/broadinstitute/sting/queue/library/ipf/vcf/VCFExtractIntervals.scala
index 3935c2138..e661f1bb5 100755
--- a/public/scala/src/org/broadinstitute/sting/queue/library/ipf/vcf/VCFExtractIntervals.scala
+++ b/public/scala/src/org/broadinstitute/sting/queue/library/ipf/vcf/VCFExtractIntervals.scala
@@ -44,6 +44,7 @@ class VCFExtractIntervals(inVCF: File, outList: File, useFilterSites: Boolean) e
         }
       }
     }
+    out.printf("%s%n",cur)
 
     out.close
   }
diff --git a/public/scala/src/org/broadinstitute/sting/queue/library/ipf/vcf/VCFExtractSamples.scala b/public/scala/src/org/broadinstitute/sting/queue/library/ipf/vcf/VCFExtractSamples.scala
index 54e541142..3179c327f 100755
--- a/public/scala/src/org/broadinstitute/sting/queue/library/ipf/vcf/VCFExtractSamples.scala
+++ b/public/scala/src/org/broadinstitute/sting/queue/library/ipf/vcf/VCFExtractSamples.scala
@@ -6,7 +6,7 @@ import collection.JavaConversions._
 import org.broadinstitute.sting.commandline._
 import java.io.{PrintWriter, PrintStream, File}
 
-class   VCFExtractSamples(inVCF: File, outVCF: File, samples: List[String]) extends InProcessFunction {
+class VCFExtractSamples(inVCF: File, outVCF: File, samples: List[String]) extends InProcessFunction {
   def this(in: File, out: File, samples: File) = this(in,out, (new XReadLines(samples)).readLines.toList)
 
   @Input(doc="VCF from which to extract samples") var inputVCF : File = inVCF