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Get rid of test case's dependence on transient methods. 

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@381 348d0f76-0448-11de-a6fe-93d51630548a
This commit is contained in:
hanna 2009-04-13 15:16:42 +00:00
parent 6e180ed44e
commit cf929a8275
1 changed files with 1 additions and 3 deletions
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4
java/test/org/broadinstitute/sting/utils/FastaSequenceFile2Test.java
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@ -46,8 +46,6 @@ public class FastaSequenceFile2Test {
@Test @Test
public void testOpenFile() { public void testOpenFile() {
System.err.println("starting testOpenFile");
long startTime = System.currentTimeMillis(); long startTime = System.currentTimeMillis();
Assert.assertNotNull( sequenceFile ); Assert.assertNotNull( sequenceFile );
long endTime = System.currentTimeMillis(); long endTime = System.currentTimeMillis();
@ -165,7 +163,7 @@ public class FastaSequenceFile2Test {
public void testSimultaneousAccess() { public void testSimultaneousAccess() {
long startTime = System.currentTimeMillis(); long startTime = System.currentTimeMillis();
FastaSequenceFile2 other = (FastaSequenceFile2)sequenceFile.clone(); // FastaSequenceFile2 other = (FastaSequenceFile2)sequenceFile.clone();
sequenceFile.seekToContig("chr1"); sequenceFile.seekToContig("chr1");
ReferenceSequence chr1 = sequenceFile.nextSequence(); ReferenceSequence chr1 = sequenceFile.nextSequence();