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git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@135 348d0f76-0448-11de-a6fe-93d51630548a
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jmaguire 2009-03-22 16:47:49 +00:00
parent 096f0dbc68
commit cf407168cf
1 changed files with 10 additions and 4 deletions
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14
playground/java/src/org/broadinstitute/sting/utils/AlleleFrequencyEstimate.java
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@ -4,29 +4,35 @@ import org.broadinstitute.sting.gatk.walkers.AlleleFrequencyWalker;
public class AlleleFrequencyEstimate { public class AlleleFrequencyEstimate {
//AlleleFrequencyEstimate(); //AlleleFrequencyEstimate();
public String location;
public char ref; public char ref;
public char alt; public char alt;
public int N; public int N;
public double qhat; public double qhat;
public double qstar; public double qstar;
public double LOD; public double LOD;
public int depth;
public double getQstar() { public double getQstar()
{
return qstar; return qstar;
} }
public double getLOD() { public double getLOD()
{
return LOD; return LOD;
} }
public AlleleFrequencyEstimate(String location, char ref, char alt, int N, double qhat, double qstar, double LOD, int depth)
public AlleleFrequencyEstimate(char ref, char alt, int N, double qhat, double qstar, double LOD) { {
this.location = location;
this.ref = ref; this.ref = ref;
this.alt = alt; this.alt = alt;
this.N = N; this.N = N;
this.qhat = qhat; this.qhat = qhat;
this.qstar = qstar; this.qstar = qstar;
this.LOD = LOD; this.LOD = LOD;
this.depth = depth;
} }
public String asString() { public String asString() {