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Changes to allow for external tests 

Changes to the build script that allow the external directory to have tests.
This means groups like CGA don't have to reinvent the wheel on testing, and
can instead use the GATKs unit and integration tests.

Signed-off-by: David Roazen <droazen@broadinstitute.org>
This commit is contained in:
Aaron McKenna 2012-01-18 16:34:42 -05:00 committed by David Roazen
parent 98f8431b07
commit ced6775de3
1 changed files with 27 additions and 2 deletions
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29
build.xml
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@ -281,6 +281,10 @@
<equals arg1="${gatk.target}" arg2="private" casesensitive="false" />
</condition>
<condition property="include.external">
<available file="${external.dir}"/>
</condition>
<condition property="include.contracts">
<equals arg1="${use.contracts}" arg2="true" />
</condition>
@ -331,7 +335,7 @@
</javac>
</target>
<target name="gatk.compile.external.source" depends="gatk.compile.public.source,gatk.compile.private.source">
<target name="gatk.compile.external.source" depends="gatk.compile.public.source,gatk.compile.private.source" if="include.external">
<subant target="compile" genericantfile="build.xml">
<property name="build.dir" value="${external.build.dir}" />
<property name="dist.dir" value="${external.dist.dir}" />
@ -761,6 +765,7 @@
<property name="java.test.classes" value="${build.dir}/java/testclasses"/>
<property name="java.public.test.classes" value="${java.test.classes}/public"/>
<property name="java.private.test.classes" value="${java.test.classes}/private"/>
<property name="java.external.test.classes" value="${java.test.classes}/external"/>
<property name="java.public.test.sources" value="${public.dir}/java/test"/>
<property name="java.private.test.sources" value="${private.dir}/java/test"/>
<property name="scala.test.classes" value="${build.dir}/scala/testclasses"/>
@ -811,7 +816,23 @@
</javac>
</target>
<target name="test.java.compile" depends="test.java.public.compile, test.java.private.compile"/>
<target name="test.java.external.compile" depends="dist,test.init.compile,test.java.public.compile" if="include.external">
<mkdir dir="${java.external.test.classes}"/>
<echo message="Sting: Compiling external test cases!"/>
<javac fork="true" memoryMaximumSize="512m" destdir="${java.external.test.classes}" debug="true" optimize="on" tempdir="${java.io.tmpdir}" srcdir="${external.dir}">
<include name="*/test/**/*.java"/>
<classpath>
<path refid="external.dependencies" />
<pathelement location="${java.public.test.classes}"/>
<pathelement location="${java.classes}"/>
<pathelement location="${java.contracts}"/>
<pathelement location="${testng.jar}"/>
</classpath>
<compilerarg value="-proc:none"/>
</javac>
</target>
<target name="test.java.compile" depends="test.java.public.compile, test.java.private.compile, test.java.external.compile"/>
<target name="test.scala.public.compile" depends="test.java.compile,scala.compile" if="scala.include">
<mkdir dir="${scala.public.test.classes}"/>
@ -852,6 +873,7 @@
<pathelement location="${java.contracts}" />
<pathelement location="${java.public.test.classes}" />
<pathelement location="${java.private.test.classes}" />
<pathelement location="${java.external.test.classes}" />
<pathelement location="${scala.public.test.classes}" />
<pathelement location="${scala.private.test.classes}" />
<pathelement location="${R.tar.dir}" />
@ -934,6 +956,9 @@
<classfileset dir="${java.private.test.classes}" erroronmissingdir="false">
<include name="**/@{testtype}.class" if="include.private"/>
</classfileset>
<classfileset dir="${java.external.test.classes}" erroronmissingdir="false">
<include name="**/@{testtype}.class" if="include.external"/>
</classfileset>
<classfileset dir="${scala.public.test.classes}" erroronmissingdir="false">
<include name="**/@{testtype}*.class" if="scala.include"/>
</classfileset>