diff --git a/java/src/org/broadinstitute/sting/gatk/walkers/genotyper/CreateTriggerTrack.java b/java/src/org/broadinstitute/sting/gatk/walkers/genotyper/CreateTriggerTrack.java index e836b071c..97a69deb7 100755 --- a/java/src/org/broadinstitute/sting/gatk/walkers/genotyper/CreateTriggerTrack.java +++ b/java/src/org/broadinstitute/sting/gatk/walkers/genotyper/CreateTriggerTrack.java @@ -47,7 +47,7 @@ public class CreateTriggerTrack extends RodWalker { Collection VCs = tracker.getAllVariantContexts(ref); if ( VCs.size() > 0 ) - writer.println(context.getLocation().getContig() + "\t" + context.getLocation().getStart() + "\t" + context.getLocation().getStart()); + writer.println(context.getLocation().getContig() + "\t" + (context.getLocation().getStart()-1) + "\t" + context.getLocation().getStart()); return 0; }