From ce51ffb56ef3baa72b3c37b59ef5c0966a9bab5c Mon Sep 17 00:00:00 2001 From: depristo Date: Fri, 4 Feb 2011 23:35:56 +0000 Subject: [PATCH] Oops, old local paths committed on accident. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5200 348d0f76-0448-11de-a6fe-93d51630548a --- .../ConstrainedMateFixingSAMFileWriterUnitTest.java | 12 ++++++------ 1 file changed, 6 insertions(+), 6 deletions(-) diff --git a/java/test/org/broadinstitute/sting/utils/sam/ConstrainedMateFixingSAMFileWriterUnitTest.java b/java/test/org/broadinstitute/sting/utils/sam/ConstrainedMateFixingSAMFileWriterUnitTest.java index 27a4be1c8..6c8cf1a31 100644 --- a/java/test/org/broadinstitute/sting/utils/sam/ConstrainedMateFixingSAMFileWriterUnitTest.java +++ b/java/test/org/broadinstitute/sting/utils/sam/ConstrainedMateFixingSAMFileWriterUnitTest.java @@ -62,13 +62,13 @@ public class ConstrainedMateFixingSAMFileWriterUnitTest extends BaseTest { IndexedFastaSequenceFile fasta = null; SAMFileReader bamIn; - File referenceFile = new File("/Users/depristo/Desktop/broadLocal/localData/Homo_sapiens_assembly18.fasta"); // todo -- replace me with network version - final File BAM_FILE = new File("/Users/depristo/Desktop/broadLocal/GATK/trunk/HiSeq.test.bam"); - final File OUTPUT_FILE = new File("/Users/depristo/Desktop/broadLocal/GATK/trunk/HiSeq.1mb.CMF.bam"); +// File referenceFile = new File("/Users/depristo/Desktop/broadLocal/localData/Homo_sapiens_assembly18.fasta"); // todo -- replace me with network version +// final File BAM_FILE = new File("/Users/depristo/Desktop/broadLocal/GATK/trunk/HiSeq.test.bam"); +// final File OUTPUT_FILE = new File("/Users/depristo/Desktop/broadLocal/GATK/trunk/HiSeq.1mb.CMF.bam"); -// File referenceFile = new File(hg18Reference); -// final File BAM_FILE = new File(validationDataLocation + "HiSeq.1mb.bam"); -// final File OUTPUT_FILE = new File("HiSeq.1mb.CMF.bam"); + File referenceFile = new File(hg18Reference); + final File BAM_FILE = new File(validationDataLocation + "HiSeq.1mb.bam"); + final File OUTPUT_FILE = new File("HiSeq.1mb.CMF.bam"); final int MAX_ISIZE_FOR_MOVE = 1000;