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Oops, old local paths committed on accident. 

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5200 348d0f76-0448-11de-a6fe-93d51630548a
This commit is contained in:
depristo 2011-02-04 23:35:56 +00:00
parent 29f3ad72f3
commit ce51ffb56e
1 changed files with 6 additions and 6 deletions
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12
java/test/org/broadinstitute/sting/utils/sam/ConstrainedMateFixingSAMFileWriterUnitTest.java
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@ -62,13 +62,13 @@ public class ConstrainedMateFixingSAMFileWriterUnitTest extends BaseTest {
IndexedFastaSequenceFile fasta = null;
SAMFileReader bamIn;
File referenceFile = new File("/Users/depristo/Desktop/broadLocal/localData/Homo_sapiens_assembly18.fasta"); // todo -- replace me with network version
final File BAM_FILE = new File("/Users/depristo/Desktop/broadLocal/GATK/trunk/HiSeq.test.bam");
final File OUTPUT_FILE = new File("/Users/depristo/Desktop/broadLocal/GATK/trunk/HiSeq.1mb.CMF.bam");
// File referenceFile = new File("/Users/depristo/Desktop/broadLocal/localData/Homo_sapiens_assembly18.fasta"); // todo -- replace me with network version
// final File BAM_FILE = new File("/Users/depristo/Desktop/broadLocal/GATK/trunk/HiSeq.test.bam");
// final File OUTPUT_FILE = new File("/Users/depristo/Desktop/broadLocal/GATK/trunk/HiSeq.1mb.CMF.bam");
// File referenceFile = new File(hg18Reference);
// final File BAM_FILE = new File(validationDataLocation + "HiSeq.1mb.bam");
// final File OUTPUT_FILE = new File("HiSeq.1mb.CMF.bam");
File referenceFile = new File(hg18Reference);
final File BAM_FILE = new File(validationDataLocation + "HiSeq.1mb.bam");
final File OUTPUT_FILE = new File("HiSeq.1mb.CMF.bam");
final int MAX_ISIZE_FOR_MOVE = 1000;