diff --git a/java/src/org/broadinstitute/sting/gatk/walkers/genotyper/BatchedCallsMerger.java b/java/src/org/broadinstitute/sting/gatk/walkers/genotyper/BatchedCallsMerger.java index e9fb6e875..9ceff6f7c 100755 --- a/java/src/org/broadinstitute/sting/gatk/walkers/genotyper/BatchedCallsMerger.java +++ b/java/src/org/broadinstitute/sting/gatk/walkers/genotyper/BatchedCallsMerger.java @@ -54,7 +54,7 @@ import net.sf.samtools.SAMReadGroupRecord; public class BatchedCallsMerger extends LocusWalker implements TreeReducible { @ArgumentCollection private UnifiedArgumentCollection UAC = new UnifiedArgumentCollection(); - @Argument(doc = "VCF file to which variants should be written", required = false) + @Argument(doc = "VCF file to which variants should be written", required = true) public VCFWriter writer = null; @Argument(fullName="rod_list", shortName="rods", doc="A comma-separated string describing the rod names representing individual call batches", required=true)