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Merge pull request #1134 from broadinstitute/gvda_cgp_docfix_1131 

Fixed missing code tag
This commit is contained in:
Geraldine Van der Auwera 2015-08-14 14:59:13 -04:00
parent e89c510ac5 5a875cb841
commit cd9db60ce2
1 changed files with 3 additions and 2 deletions
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5
protected/gatk-tools-protected/src/main/java/org/broadinstitute/gatk/tools/walkers/variantutils/CalculateGenotypePosteriors.java
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@ -81,7 +81,7 @@ import java.util.*;
*
* <p>
* Given a VCF with genotype likelihoods from the HaplotypeCaller, UnifiedGenotyper, or another source which provides
* -unbiased- genotype likelihoods, calculate the posterior genotype state and likelihood given allele frequency
* <b>unbiased</b> genotype likelihoods, calculate the posterior genotype state and likelihood given allele frequency
* information from both the samples themselves and input VCFs describing allele frequencies in related populations.</p>
*
* <p>The AF field will not be used in this calculation as it does not provide a way to estimate the confidence interval
@ -139,7 +139,8 @@ import java.util.*;
* -R reference.fasta \
* -V NA12878.wgs.HC.vcf \
* -supporting 1000G_EUR.genotypes.combined.vcf \
* -o NA12878.wgs.HC.posteriors.vcf \
* -o NA12878.wgs.HC.posteriors.vcf
* </pre>
*
* <h4>Refine the genotypes of a large panel based on the discovered allele frequency</h4>
* <pre>