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Changing IndelSummary eval module so that PostCallingQC.scala can run with MIXED-record VCFs.

This commit is contained in:
Ryan Poplin 2012-04-10 00:22:40 -04:00
parent 9ece93ae9c
commit cd9bf1bfc3
1 changed files with 3 additions and 1 deletions
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4
public/java/src/org/broadinstitute/sting/gatk/walkers/varianteval/evaluators/IndelSummary.java
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@ -207,7 +207,9 @@ public class IndelSummary extends VariantEvaluator implements StandardEval {
break; break;
default: default:
throw new UserException.BadInput("Unexpected variant context type: " + eval); // TODO - MIXED, SYMBOLIC, and MNP records are skipped over
//throw new UserException.BadInput("Unexpected variant context type: " + eval);
break;
} }
return; return;