diff --git a/public/java/src/org/broadinstitute/sting/gatk/walkers/varianteval/evaluators/IndelSummary.java b/public/java/src/org/broadinstitute/sting/gatk/walkers/varianteval/evaluators/IndelSummary.java index 786b7296b..c22f82969 100644 --- a/public/java/src/org/broadinstitute/sting/gatk/walkers/varianteval/evaluators/IndelSummary.java +++ b/public/java/src/org/broadinstitute/sting/gatk/walkers/varianteval/evaluators/IndelSummary.java @@ -207,7 +207,9 @@ public class IndelSummary extends VariantEvaluator implements StandardEval { break; default: - throw new UserException.BadInput("Unexpected variant context type: " + eval); + // TODO - MIXED, SYMBOLIC, and MNP records are skipped over + //throw new UserException.BadInput("Unexpected variant context type: " + eval); + break; } return;