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Merge pull request #419 from broadinstitute/mc_dpp_updates_part2 

Mc dpp updates part2
This commit is contained in:
MauricioCarneiro 2013-11-07 13:42:32 -08:00
parent f15355856a 725656ae7e
commit cd5beca794
1 changed files with 1 additions and 1 deletions
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2
public/java/src/org/broadinstitute/sting/queue/extensions/gatk/GATKExtensionsGenerator.java
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@ -325,7 +325,7 @@ public class GATKExtensionsGenerator extends CommandLineProgram {
* @throws IOException If the file cannot be written.
*/
private void writeFile(String fullClassName, String content) throws IOException {
File outputFile = new File(outputDirectory, fullClassName.replace(".", "/") + ".scala");
File outputFile = new File(outputDirectory, fullClassName.replace(".", "/") + "MoleculoPipeline.scala");
if (outputFile.exists()) {
String existingContent = FileUtils.readFileToString(outputFile);
if (StringUtils.equals(content, existingContent))