From cd32b6ae541ecd9a74217acdac3d8b5afcc1c9d5 Mon Sep 17 00:00:00 2001
From: Mark DePristo <depristo@broadinstitute.org>
Date: Tue, 26 Jun 2012 17:30:30 -0400
Subject: [PATCH] CombineVariantsUnitTest was failing because the header repair
 was fixing the problem it wanted to detect

---
 .../gatk/walkers/variantutils/CombineVariantsUnitTest.java    | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/public/java/test/org/broadinstitute/sting/gatk/walkers/variantutils/CombineVariantsUnitTest.java b/public/java/test/org/broadinstitute/sting/gatk/walkers/variantutils/CombineVariantsUnitTest.java
index 31f704b85..21d49638f 100644
--- a/public/java/test/org/broadinstitute/sting/gatk/walkers/variantutils/CombineVariantsUnitTest.java
+++ b/public/java/test/org/broadinstitute/sting/gatk/walkers/variantutils/CombineVariantsUnitTest.java
@@ -39,9 +39,9 @@ public class CombineVariantsUnitTest {
                 "##fileformat=VCFv4.0\n"+
                 "##filedate=2010-06-21\n"+
                 "##reference=NCBI36\n"+
-                "##INFO=<ID=GC, Number=0, Type=Flag, Description=\"Overlap with Gencode CCDS coding sequence\">\n"+
+                "##INFO=<ID=GC, Number=1, Type=String, Description=\"Overlap with Gencode CCDS coding sequence\">\n"+
                 "##INFO=<ID=DP, Number=1, Type=Integer, Description=\"Total number of reads in haplotype window\">\n"+
-                "##INFO=<ID=AF, Number=1, Type=String, Description=\"Dindel estimated population allele frequency\">\n"+ // string to integer
+                "##INFO=<ID=AF, Number=1, Type=Float, Description=\"Dindel estimated population allele frequency\">\n"+ // string to integer
                 "##FILTER=<ID=NoQCALL, Description=\"Variant called by Dindel but not confirmed by QCALL\">\n"+
                 "##FORMAT=<ID=GT, Number=1, Type=String, Description=\"Genotype\">\n"+
                 "##FORMAT=<ID=HQ, Number=2, Type=Integer, Description=\"Haplotype quality\">\n"+